PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00214g09008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 571aa    MW: 63836.5 Da    PI: 6.9059
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00214g09008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP110.22.9e-34178297389
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec. 73 
                               g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak+ai+el ++             +      + 
  Peinf101Scf00214g09008.1 178 GRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELEELppwkptigpientN------Fd 256
                               89*************************************************************88887665544331......11 PP

                       TCP  74 ...eaesssssasnsssg......................k 89 
                                  ++++++ s++++  +                      +
  Peinf101Scf00214g09008.1 257 qekKQQEENYSTQQNDVNvslvdniagpsckrammmlgneS 297
                               22133333333333333355666666655543333333320 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-30178320IPR005333Transcription factor, TCP
PROSITE profilePS5136934.295179237IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MVNGICKVGW QGLLGEAEAT ISNFTEESKQ LRNKPVTQRY HKQKLEQQKQ YKILSLDPQR  60
NQHHHYHHQN QNVGEEGEQE EEEEKDQQVF HAHHLQDHFQ QPHELFLHNH HFLYQNVDTQ  120
QPQQTLNPKQ PKKRSYIPSS SSPKQNLEHG KLRGKMGLKN SGGEIVEVQG GHIVRSIGRK  180
DRHSKVCTAK GPRDRRVRLS AHTAIQFYDV QDRLGYDRPS KAVDWLIKKA KAAIDELEEL  240
PPWKPTIGPI ENTNFDQEKK QQEENYSTQQ NDVNVSLVDN IAGPSCKRAM MMLGNESANS  300
SGDNANARFM PQSLDSETIA DTIKSFFPMG GSSEGSSSAA MQFQSFQESN LLSRSNSQSQ  360
DLRLSLQSFQ DPILLHHQNQ QAPHHNHSAD HTEEQVQTHF QASNFFHGTP LGFDASGWSE  420
HQQQPVELGR MQRLAATRAG GDTGIALGGG AVTGGGGYLF NSQPAPPLIQ QFFTQNQFFS  480
QRGPLQSSYS PSIRAWIDPS AIAIATADPI YHHQHPQTVL PMYSASIPGI GFASELGGFS  540
GFRIPARIQG DIEEHDGISD KPSSASSDSR H
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095841e-104AC209584.1 Solanum lycopersicum DNA sequence from clone LE_HBa-21L2 on chromosome 12, complete sequence.
GenBankEF0915741e-104EF091574.1 Solanum lycopersicum SlTCP3 mRNA, complete cds.
GenBankGQ4963211e-104GQ496321.1 Solanum lycopersicum TCP transcription factor 3 (TCP3) mRNA, complete cds.
GenBankHG9754511e-104HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755241e-104HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630327.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_009630328.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463776.10.0PREDICTED: transcription factor TCP4-like
RefseqXP_016463777.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR52e-97TCP4_ARATH; Transcription factor TCP4
TrEMBLM1B8S20.0M1B8S2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000397860.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.38e-54TCP family protein